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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_6627808_6627898_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6627808 - 6627898
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
GGCTTTCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TGATTTTTGATG
Flanking Amino Acid:
VAVMEGKQAKVLENSEGART
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
77
33.6
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
69.8
0.45
0.9
61.7
40
Minor 5ss
35.2
-1.7
2.9
41.4
39.1
Minor BPS
58.1
0.11
1.3
58.74
37.5

Associated Gene:

Gene:
HSPA9
Ensembl Gene ID:
ENSAPLG00000009263
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009695
6610397 - 6627943
17547