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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_6652421_6662324_R

Intron Information:

Intron Rank:
149411
Intron Class:
major
Intron Phase:
Intron Coordinates:
6652421 - 6662324
Intron Length:
9904

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCGGTGA
5'SS Class:
major
3'SS Sequence:
CTCTCACTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTTTCTCTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1
62.9
40
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
76.6
0.6
0.8
73.9
30
Minor 5ss
29.6
-2.3
3.3
38.1
46.8
Minor BPS
62.9
0.49
2.1
88.42
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027888
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023592
6646466 - 6663438
16973