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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_66632_66880_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
66632 - 66880
Intron Length:
249

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAGCA
5'SS Class:
major
3'SS Sequence:
TGTCTCCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAC
U12 Branch Point Sequence:
CCACCTTTACCC
Flanking Amino Acid:
EYWSFQSSPKAPRARRFSSG
Intron Amino Acid Position:
545

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1.1
68.7
36.4
Major BPS
72.6
0.56
0.9
63.1
35.8
Major PPT
83.4
0.75
0.8
77.3
31.4
Minor 5ss
36.3
-1.6
3.3
48.6
47.1
Minor BPS
50.2
-0
1.7
55.93
42.8

Associated Gene:

Gene:
ABLIM3
Ensembl Gene ID:
ENSAPLG00000012449
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029729
28564 - 68885
40322
ENSAPLT00000021842
28564 - 68885
40322
ENSAPLT00000013019
28337 - 69087
40751
ENSAPLT00000042079
28564 - 68885
40322