About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_6735702_6742745_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6735702 - 6742745
Intron Length:
7044

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCACGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCTTTTTTCACG
Flanking Amino Acid:
VAAVEDVRKQGGLMKTASGE
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
75.1
35.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
84.7
0.78
0.8
81.7
29.2
Minor 5ss
29.8
-2.3
3.3
37.5
47.2
Minor BPS
58.9
0.14
1.8
65.89
42.8

Associated Gene:

Gene:
CTNNA1
Ensembl Gene ID:
ENSAPLG00000008629
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021422
6733665 - 6829893
96229
ENSAPLT00000009083
6733665 - 6828880
95216
ENSAPLT00000047173
6733665 - 6829893
96229