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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_6743805_6745926_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6743805 - 6745926
Intron Length:
2122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGTGA
5'SS Class:
major
3'SS Sequence:
ATTTTCCTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
CTTTCTTTAATT
Flanking Amino Acid:
LNIMAAKRQQELKDVGHRDQ
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1
61.7
39.4
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
75.1
0.56
0.9
71.3
33.9
Minor 5ss
41.5
-0.9
3.2
55.7
48.5
Minor BPS
83.7
1.13
1
91.31
32.6

Associated Gene:

Gene:
CTNNA1
Ensembl Gene ID:
ENSAPLG00000008629
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021422
6733665 - 6829893
96229
ENSAPLT00000009083
6733665 - 6828880
95216
ENSAPLT00000047173
6733665 - 6829893
96229