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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_6775813_6776573_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6775813 - 6776573
Intron Length:
761

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTAATCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAA
U12 Branch Point Sequence:
TCTCTTTTAATC
Flanking Amino Acid:
MQPPMYSKEWLSSLHPELLY
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
81.5
32.7
Major BPS
74.9
0.62
1
67.3
39.2
Major PPT
76.9
0.6
0.9
77.8
34.3
Minor 5ss
35.8
-1.6
3.3
40.8
45.4
Minor BPS
67.9
0.54
1.2
70.66
35.2

Associated Gene:

Gene:
LRRTM2
Ensembl Gene ID:
ENSAPLG00000000895
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000878
6774694 - 6776603
1910