About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_6785105_6798713_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6785105 - 6798713
Intron Length:
13609

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATGG
5'SS Class:
strong_major
3'SS Sequence:
TCCCCTGACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTTCCCCTGACA
Flanking Amino Acid:
FREHANKLIEVANLACSISN
Intron Amino Acid Position:
424

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
72.5
39.9
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
65.7
0.35
0.9
60
34.5
Minor 5ss
37.3
-1.4
3
47.6
47.9
Minor BPS
68.1
0.56
1.7
81.48
32.9

Associated Gene:

Gene:
CTNNA1
Ensembl Gene ID:
ENSAPLG00000008629
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021422
6733665 - 6829893
96229
ENSAPLT00000009083
6733665 - 6828880
95216
ENSAPLT00000047173
6733665 - 6829893
96229
ENSAPLT00000030403
6784967 - 6829893
44927
ENSAPLT00000023665
6781666 - 6829893
48228