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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_6798807_6808305_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6798807 - 6808305
Intron Length:
9499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAAAG
5'SS Class:
major
3'SS Sequence:
AGGTGTTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
CATGCTTTAAAA
Flanking Amino Acid:
ASQLEALCPQVINAALALAA
Intron Amino Acid Position:
455

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1.1
71.6
40.1
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
73
0.52
1
65.7
44.8
Minor 5ss
38.4
-1.3
2.9
48.5
47.2
Minor BPS
60.1
0.31
1.6
65.36
41.2

Associated Gene:

Gene:
CTNNA1
Ensembl Gene ID:
ENSAPLG00000008629
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021422
6733665 - 6829893
96229
ENSAPLT00000009083
6733665 - 6828880
95216
ENSAPLT00000047173
6733665 - 6829893
96229
ENSAPLT00000030403
6784967 - 6829893
44927
ENSAPLT00000023665
6781666 - 6829893
48228