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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_6814062_6815104_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6814062 - 6815104
Intron Length:
1043

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
GTCCTTCATACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTCAT
U12 Branch Point Sequence:
GTGTCCTTCATA
Flanking Amino Acid:
LEATKLLSNTVMPRFTEQVE
Intron Amino Acid Position:
574

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
78.9
35.3
Major BPS
75
0.62
1.1
77.2
36
Major PPT
74.9
0.56
0.9
68.8
36.3
Minor 5ss
34
-1.8
3.5
46.6
48.7
Minor BPS
64.2
0.44
1.8
71.79
40.8

Associated Gene:

Gene:
CTNNA1
Ensembl Gene ID:
ENSAPLG00000008629
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021422
6733665 - 6829893
96229
ENSAPLT00000009083
6733665 - 6828880
95216
ENSAPLT00000047173
6733665 - 6829893
96229
ENSAPLT00000030403
6784967 - 6829893
44927
ENSAPLT00000023665
6781666 - 6829893
48228