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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_6815257_6817992_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6815257 - 6817992
Intron Length:
2736

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTGCA
5'SS Class:
major
3'SS Sequence:
TATCTTTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TCTTACTGAATT
Flanking Amino Acid:
DIRKAVLMIRTPEELDDSDF
Intron Amino Acid Position:
625

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.51
1
64.8
35.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
85.6
0.8
0.7
84.4
30
Minor 5ss
28.8
-2.4
3
29
36.8
Minor BPS
66
0.58
1.6
81.93
39.6

Associated Gene:

Gene:
CTNNA1
Ensembl Gene ID:
ENSAPLG00000008629
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021422
6733665 - 6829893
96229
ENSAPLT00000009083
6733665 - 6828880
95216
ENSAPLT00000047173
6733665 - 6829893
96229
ENSAPLT00000030403
6784967 - 6829893
44927
ENSAPLT00000023665
6781666 - 6829893
48228