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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_6820692_6826627_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6820692 - 6826627
Intron Length:
5936

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTCAC
U12 Branch Point Sequence:
GAAACCTCACCT
Flanking Amino Acid:
DKLGRTIADHCPDSACKQDL
Intron Amino Acid Position:
758

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1
74.4
36.1
Major BPS
63.6
0.34
1
65.3
32.1
Major PPT
86.3
0.82
0.8
77.7
36.7
Minor 5ss
36.9
-1.5
3
49.2
40.2
Minor BPS
48.4
-0
1.9
64.58
44.7

Associated Gene:

Gene:
CTNNA1
Ensembl Gene ID:
ENSAPLG00000008629
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021422
6733665 - 6829893
96229
ENSAPLT00000009083
6733665 - 6828880
95216
ENSAPLT00000047173
6733665 - 6829893
96229
ENSAPLT00000023665
6781666 - 6829893
48228