About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_68248_68636_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68248 - 68636
Intron Length:
389

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
CTCCCTCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
CTCTCCACACCT
Flanking Amino Acid:
PAYRRNGLHRPPSAELFHYD
Intron Amino Acid Position:
636

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
79.6
34.4
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
74.2
0.54
0.7
68
25.7
Minor 5ss
36.8
-1.5
3.3
44.3
43.6
Minor BPS
47.2
-0.1
2.1
68.85
47.6

Associated Gene:

Gene:
ABLIM3
Ensembl Gene ID:
ENSAPLG00000012449
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013019
28337 - 69087
40751
ENSAPLT00000042079
28564 - 68885
40322
ENSAPLT00000029729
28564 - 68885
40322
ENSAPLT00000021842
28564 - 68885
40322