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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_68698_68915_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
68698 - 68915
Intron Length:
218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGTGC
5'SS Class:
major
3'SS Sequence:
TCTGTCCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTCCAT
U12 Branch Point Sequence:
GTCTCTTCCATC
Flanking Amino Acid:
STNAVNWGMREYKVRWPCST
Intron Amino Acid Position:
656

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
66.7
39.8
Major BPS
65
0.37
1.3
76.1
38
Major PPT
75.6
0.58
0.8
69
31.7
Minor 5ss
37.1
-1.5
3.3
50.7
45.8
Minor BPS
47.5
-0.2
1.9
58.66
41.1

Associated Gene:

Gene:
ABLIM3
Ensembl Gene ID:
ENSAPLG00000012449
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013019
28337 - 69087
40751