About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_6944256_6948953_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6944256 - 6948953
Intron Length:
4698

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TACTTTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TAATTTTTAATT
Flanking Amino Acid:
ICDMPVHSNKEWNHHINGAT
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.7
83.6
22.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
78.7
0.65
0.9
73.2
36.9
Minor 5ss
35
-1.7
2.8
42.9
44.7
Minor BPS
74
0.83
1.1
81.34
34.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008118
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025343
6943183 - 6960829
17647
ENSAPLT00000008509
6943183 - 6959241
16059
ENSAPLT00000039110
6943183 - 6961248
18066