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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_6949016_6949829_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6949016 - 6949829
Intron Length:
814

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTATGAATT
5'SS Class:
major
3'SS Sequence:
CTTTGCTTTCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATCT
Flanking Amino Acid:
HSRRCQLLLEIYPEWNPDSD
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
79.3
33.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
73.8
0.54
1
71.4
38.6
Minor 5ss
47.9
-0.2
2.9
71.3
38.8
Minor BPS
79.8
1.01
1.4
95.48
31.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008118
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008509
6943183 - 6959241
16059
ENSAPLT00000039110
6943183 - 6961248
18066
ENSAPLT00000025343
6943183 - 6960829
17647