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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_6949872_6950208_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6949872 - 6950208
Intron Length:
337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGTTTTAAAAT
Flanking Amino Acid:
WNPDSDSGHGMGDPFMLQQS
Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
1
83.8
34.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.6
0.73
0.7
76.1
32.5
Minor 5ss
39.9
-1.1
2.9
56.1
41.4
Minor BPS
57.5
0.31
1.7
76.07
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008118
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025343
6943183 - 6960829
17647
ENSAPLT00000008509
6943183 - 6959241
16059
ENSAPLT00000039110
6943183 - 6961248
18066