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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_6950313_6951594_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6950313 - 6951594
Intron Length:
1282

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACAATA
5'SS Class:
strong_major
3'SS Sequence:
TCATTTTTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TTGAACTAAACT
Flanking Amino Acid:
HLGGPPVGPRGAGNGNMQGP
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1.1
80.8
33.7
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
76.8
0.6
1
78.8
33.2
Minor 5ss
42.6
-0.8
3
57.9
46.3
Minor BPS
57.3
0.31
1.9
77.77
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008118
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008509
6943183 - 6959241
16059