Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_6953367_6954648_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6953367 - 6954648

Intron Length:

1282

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACTGAC

5'SS Class:

strong_major

3'SS Sequence:

TTAATCTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TGTATTTTAATC

Flanking Amino Acid:

NYILMRMKSQAFIEMETRED

Intron Amino Acid Position:

526

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.2

0.76

1.1

75.8

34.3

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

83.9

0.76

0.8

81.3

35.9

Minor 5ss

38.5

-1.3

3.2

45.2

Minor BPS

67.1

0.52

1.2

71.13

34.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008118

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025343

6943183 - 6960829

17647

ENSAPLT00000008509

6943183 - 6959241

16059

ENSAPLT00000039110

6943183 - 6961248

18066