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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_6955771_6956186_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6955771 - 6956186
Intron Length:
416

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAACTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TTCTTCTTTACA
Flanking Amino Acid:
GVELLKKDKTRKRTYSPDSK
Intron Amino Acid Position:
584

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1.1
75.8
35
Major BPS
77.5
0.68
1
79.6
33
Major PPT
92
0.94
0.6
87.3
23.2
Minor 5ss
47
-0.3
2.5
62.8
41.8
Minor BPS
70.2
0.63
1.6
78.71
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008118
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025343
6943183 - 6960829
17647
ENSAPLT00000008509
6943183 - 6959241
16059
ENSAPLT00000039110
6943183 - 6961248
18066