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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_6956578_6958063_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6956578 - 6958063
Intron Length:
1486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTGTA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAG
U12 Branch Point Sequence:
GTTTTCTCAACA
Flanking Amino Acid:
NPATKKKLKKRYVGGFPRSM
Intron Amino Acid Position:
715

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
83.4
28.2
Major BPS
66.8
0.42
1.5
75.7
36.5
Major PPT
78.5
0.64
0.9
74.2
35.4
Minor 5ss
36.3
-1.5
3.3
49.5
46.6
Minor BPS
72.3
0.69
1.5
80.34
35.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008118
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039110
6943183 - 6961248
18066
ENSAPLT00000025343
6943183 - 6960829
17647
ENSAPLT00000008509
6943183 - 6959241
16059