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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_6958458_6960815_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6958458 - 6960815
Intron Length:
2358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
TTTCTTTTAACA
Flanking Amino Acid:
IGPYQPNIPVENSG*
Intron Amino Acid Position:
875

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
66.1
45
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
87.2
0.84
0.8
84.6
28.7
Minor 5ss
34.5
-1.8
3.4
44.4
44.4
Minor BPS
78.7
0.9
1
84.25
28.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008118
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025343
6943183 - 6960829
17647