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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_6970919_6972165_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6970919 - 6972165
Intron Length:
1247

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAATTCA
5'SS Class:
major
3'SS Sequence:
TTCCCTTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
AACGATTCAACT
Flanking Amino Acid:
SDSSSLEDLVVKSNLNPNAK
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
72.7
32.4
Major BPS
61.3
0.28
1
62
30.6
Major PPT
81.7
0.71
0.7
80.3
25
Minor 5ss
40
-1.1
2.8
47.4
43.3
Minor BPS
46.8
-0.1
1.8
60.61
42.9

Associated Gene:

Gene:
PAIP2
Ensembl Gene ID:
ENSAPLG00000019131
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029502
6968364 - 6972231
3868