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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_6976768_6976818_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
6976768 - 6976818
Intron Length:
51

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAT|GCAAAGCCA
5'SS Class:
major
3'SS Sequence:
AGCTGGGTCGGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATGAGAT
U12 Branch Point Sequence:
GAGATCTGAGCT
Flanking Amino Acid:
KVHFDRGARGIKLHQAQQRA
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.3
60.9
37.3
Major BPS
55.2
0.13
1.2
52.5
43.3
Major PPT
44.6
-0.3
1.7
41.9
42.6
Minor 5ss
22.5
-3.2
4.1
34.8
41.5
Minor BPS
46.7
-0.1
1.7
59.68
43

Associated Gene:

Gene:
SLC23A1
Ensembl Gene ID:
ENSAPLG00000008074
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040937
6975776 - 6981457
5682