Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_6978330_6978367_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

6978330 - 6978367

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTGATCGGG

5'SS Class:

major

3'SS Sequence:

GGGCGCTGCTCAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGGTGAT

U12 Branch Point Sequence:

GCTGCTGGGGCT

Flanking Amino Acid:

XXXXPAWWRCYIGPLTVTP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.1

0.33

1.1

48.6

Major BPS

66.1

0.4

1.3

57.1

49.4

Major PPT

54.6

0.1

1.1

49.8

43.8

Minor 5ss

30.5

-2.2

3.3

35.1

43.4

Minor BPS

28.9

-1.5

3.5

51.45

43.7

Associated Gene:

Gene:

SLC23A1

Ensembl Gene ID:

ENSAPLG00000008074

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045292

6974511 - 6978396

3886