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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_6996288_6998302_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6996288 - 6998302
Intron Length:
2015

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATC|GTAAGTCAC
5'SS Class:
major
3'SS Sequence:
CATGTTTTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTGAA
U12 Branch Point Sequence:
TTTTTCTCCATG
Flanking Amino Acid:
TNPPYSLFYKSSIGHVISRE
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.3
65
41.1
Major BPS
69.4
0.48
1.2
63.4
44.3
Major PPT
73.6
0.53
0.9
68.4
37.1
Minor 5ss
36
-1.6
2.9
45.2
37
Minor BPS
52.1
-0
2
66.82
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017467
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028765
6993222 - 6998469
5248