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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_7039663_7040034_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7039663 - 7040034
Intron Length:
372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGAT
5'SS Class:
strong_major
3'SS Sequence:
TCCTGCCTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTCAA
U12 Branch Point Sequence:
CCTGCCTTACAG
Flanking Amino Acid:
EFAMESAPVQQISQLLSLLH
Intron Amino Acid Position:
957

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
75.1
35.1
Major BPS
52.8
0.07
1.3
57.3
41.7
Major PPT
79.2
0.66
0.8
72
32.7
Minor 5ss
30.7
-2.2
3.7
46.1
49.1
Minor BPS
48
-0.2
1.9
51.73
48.5

Associated Gene:

Gene:
PCDH12
Ensembl Gene ID:
ENSAPLG00000007583
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007870
7036795 - 7046022
9228