About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_7054943_7055698_R


Intron Information:

Intron Rank:
7

Intron Class:
major-like

Intron Phase:
0

Intron Coordinates:
7054943 - 7055698

Intron Length:
756

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTATCCACA

5'SS Class:
weak_major

3'SS Sequence:
TCTCTGTTTCCAG|G

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
TTCACAC

U12 Branch Point Sequence:
TATTACCTGATT

Flanking Amino Acid:
GRGTEKDLEKAAFYYYRAAS

Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
68.6
0.44
1.2
64.2
41.8

Major BPS
67.8
0.44
1
75
30.1

Major PPT
84.4
0.77
0.8
76.2
37.8

Minor 5ss
54.6
0.16
2.1
67.5
43.3

Minor BPS
56
0.27
1.9
78.08
37.9

Associated Gene:

Gene:
DELE1

Ensembl Gene ID:

Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

7049505 - 7066147
16643