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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_7056648_7058183_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7056648 - 7058183
Intron Length:
1536

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTGAATCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CTTTTCTGAATC
Flanking Amino Acid:
SPGPVPHSTKGDPAQRGRLE
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
87.9
29.3
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
70.4
0.46
0.9
66.3
39.5
Minor 5ss
49.8
-0
2.8
73.2
43.7
Minor BPS
68.3
0.55
1.4
74.51
36.5

Associated Gene:

Gene:
DELE1
Ensembl Gene ID:
ENSAPLG00000007579
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007856
7049505 - 7066147
16643