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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_7172987_7180140_F

Intron Information:

Intron Rank:
140112
Intron Class:
major
Intron Phase:
Intron Coordinates:
7172987 - 7180140
Intron Length:
7154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCCTTTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
80.7
33.8
Major BPS
100
1.24
0.5
100
0
Major PPT
87.8
0.85
0.7
85.6
27.3
Minor 5ss
35.6
-1.6
2.6
35.6
40.5
Minor BPS
80.7
1.05
1
92.82
28.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025345
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036472
7172789 - 7180629
7841