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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_7179709_7180140_F

Intron Information:

Intron Rank:
140111
Intron Class:
major
Intron Phase:
Intron Coordinates:
7179709 - 7180140
Intron Length:
432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGGGTCGA
5'SS Class:
major
3'SS Sequence:
CTTTTCATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCCTTTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.47
1.1
55.9
44.9
Major BPS
100
1.24
0.5
100
0
Major PPT
87.8
0.85
0.7
85.6
27.3
Minor 5ss
26.3
-2.7
2.9
23
37.3
Minor BPS
80.7
1.05
1
92.82
28.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025345
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018279
7179079 - 7180629
1551