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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_733187_746745_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
733187 - 746745
Intron Length:
13559

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTCAA
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTCAATTAAATA
Flanking Amino Acid:
EKDMPEEEKQTRRKESTTLK
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
76.1
35
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
84.1
0.77
0.7
80.1
25.2
Minor 5ss
33.6
-1.9
2.9
41.3
45
Minor BPS
48
-0.1
1.8
60.33
40.3

Associated Gene:

Gene:
TTC1
Ensembl Gene ID:
ENSAPLG00000008791
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009153
732665 - 767466
34802