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Intron Name: Anas_platyrhynchos_platyrhynchos_14_7353007_7373777_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7353007 - 7373777

Intron Length:

20771

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAGGTGCT

5'SS Class:

major

3'SS Sequence:

TTGCTTCTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAACGAT

U12 Branch Point Sequence:

CCGTGCCTAACG

Flanking Amino Acid:

SIGEMEHPENDLRPLPDVAM

Intron Amino Acid Position:

1092

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.3

0.64

1.1

70.1

40.6

Major BPS

54.2

0.11

1.3

52.8

42.7

Major PPT

85.8

0.8

80.9

31.1

Minor 5ss

34.4

-1.8

3.5

50.4

Minor BPS

46.5

-0.4

2.2

51.3

48.8

Associated Gene:

Gene:

PCDH1

Ensembl Gene ID:

ENSAPLG00000007472

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040455

7352621 - 7391574

38954

ENSAPLT00000007747

7352621 - 7396127

43507