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Intron Name: Anas_platyrhynchos_platyrhynchos_14_7373998_7387051_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7373998 - 7387051

Intron Length:

13054

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGAGAG

5'SS Class:

strong_major

3'SS Sequence:

TCTCTTCCTCCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GACACAT

U12 Branch Point Sequence:

ATCGGCTTATCT

Flanking Amino Acid:

TNPQKYTNKQLPHRRVTFSA

Intron Amino Acid Position:

1019

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.71

40.1

Major BPS

52.1

0.05

1.2

37.5

Major PPT

85.1

0.79

0.7

77.2

31.5

Minor 5ss

28.4

-2.5

3.5

47.6

Minor BPS

49.1

0.01

2.1

69.66

47.3

Associated Gene:

Gene:

PCDH1

Ensembl Gene ID:

ENSAPLG00000007472

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026400

7354532 - 7391574

37043

ENSAPLT00000007747

7352621 - 7396127

43507

ENSAPLT00000040455

7352621 - 7391574

38954