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Intron Name: Anas_platyrhynchos_platyrhynchos_14_7389245_7390599_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7389245 - 7390599

Intron Length:

1355

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTTTG

5'SS Class:

strong_major

3'SS Sequence:

CTCTGTCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTCAC

U12 Branch Point Sequence:

TCTTGCTCACCA

Flanking Amino Acid:

NSPVGHSVLQVKANDSDQGA

Intron Amino Acid Position:

288

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.4

0.7

83.9

30.3

Major BPS

69.8

0.49

1.1

71.3

36.7

Major PPT

74.8

0.56

0.8

68.9

31.6

Minor 5ss

38.4

-1.3

2.9

48.7

47.5

Minor BPS

48.8

-0.1

2.2

67.11

45.4

Associated Gene:

Gene:

PCDH1

Ensembl Gene ID:

ENSAPLG00000007472

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026400

7354532 - 7391574

37043

ENSAPLT00000007747

7352621 - 7396127

43507

ENSAPLT00000040455

7352621 - 7391574

38954