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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_7429118_7429528_F

Intron Information:

Intron Rank:
149206
Intron Class:
major
Intron Phase:
Intron Coordinates:
7429118 - 7429528
Intron Length:
411

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCACA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCATTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
GCTTTCTCATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
76.7
33.9
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
85.3
0.79
0.8
77.2
36
Minor 5ss
34.2
-1.8
2.8
40.7
45.3
Minor BPS
50.2
0.08
1.8
68.21
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030224
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039068
7415743 - 7430598
14856
ENSAPLT00000021714
7415743 - 7430598
14856