Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_7487188_7487287_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7487188 - 7487287

Intron Length:

100

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CAG|GCCAGTGCA

5'SS Class:

strong_major

3'SS Sequence:

GTTCCCCCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTCAC

U12 Branch Point Sequence:

GTTCCCCCCACA

Flanking Amino Acid:

LCVVICKQCAGQHRSLGSNI

Intron Amino Acid Position:

694

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.2

0.93

0.9

80.7

29.4

Major BPS

69.8

0.49

1.1

71.3

36.7

Major PPT

72.7

0.51

0.8

65.4

30.5

Minor 5ss

18.1

-3.7

3.5

24.4

36.7

Minor BPS

45.3

-0.3

2.2

63.2

42.3

Associated Gene:

Gene:

ARAP3

Ensembl Gene ID:

ENSAPLG00000005934

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037886

7478073 - 7494929

16857

ENSAPLT00000034299

7478073 - 7494929

16857

ENSAPLT00000006254

7479296 - 7494929

15634