Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_7488695_7488864_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

7488695 - 7488864

Intron Length:

170

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTATCCCCA

5'SS Class:

weak_major

3'SS Sequence:

TCATCCTCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

GGTTTCTCATCC

Flanking Amino Acid:

QAPTNPGTTERFRFTLELFL

Intron Amino Acid Position:

928

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.9

0.38

1.2

55.1

43.8

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

74.9

0.56

0.8

69.4

30.9

Minor 5ss

49.8

-0

2.5

66.4

44.6

Minor BPS

51.5

0.03

1.8

64.06

41.2

Associated Gene:

Gene:

ARAP3

Ensembl Gene ID:

ENSAPLG00000005934

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034299

7478073 - 7494929

16857

ENSAPLT00000006254

7479296 - 7494929

15634

ENSAPLT00000037886

7478073 - 7494929

16857