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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_7488968_7489051_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7488968 - 7489051
Intron Length:
84

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCGG
5'SS Class:
strong_major
3'SS Sequence:
TTCCATCCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
CTTTGCCCATCT
Flanking Amino Acid:
LQAWASTIGKWFTPVSCHCL
Intron Amino Acid Position:
963

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
59.7
46.7
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
74.9
0.56
0.8
68.7
31.5
Minor 5ss
31.8
-2.1
3
38.6
46.5
Minor BPS
43.2
-0.4
2.4
68.76
47.7

Associated Gene:

Gene:
ARAP3
Ensembl Gene ID:
ENSAPLG00000005934
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006254
7479296 - 7494929
15634
ENSAPLT00000037886
7478073 - 7494929
16857
ENSAPLT00000034299
7478073 - 7494929
16857