Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_7492085_7492198_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7492085 - 7492198

Intron Length:

114

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGTGA

5'SS Class:

strong_major

3'SS Sequence:

TTCCACCGGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGTTAAT

U12 Branch Point Sequence:

ATCTCTTCCACC

Flanking Amino Acid:

PISEASCLFTGAKRETPKCG

Intron Amino Acid Position:

1390

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.82

0.9

71.8

36.2

Major BPS

66.6

0.41

1.4

69.7

44.2

Major PPT

61.8

0.27

1.1

57.8

38.2

Minor 5ss

30.7

-2.2

3.2

46.8

Minor BPS

49.9

-0

64.51

41.5

Associated Gene:

Gene:

ARAP3

Ensembl Gene ID:

ENSAPLG00000005934

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037886

7478073 - 7494929

16857

ENSAPLT00000034299

7478073 - 7494929

16857

ENSAPLT00000006254

7479296 - 7494929

15634