Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_7501043_7501122_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7501043 - 7501122

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACGGGCT

5'SS Class:

strong_major

3'SS Sequence:

GTCCCCCTCCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGCTGAC

U12 Branch Point Sequence:

CAGGGCTGACGT

Flanking Amino Acid:

MLKKSIEQLQKAQA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.5

0.72

71.4

37.4

Major BPS

49.4

-0

1.3

42.8

41.8

Major PPT

0.47

0.8

61.4

Minor 5ss

30.8

-2.2

3.8

47.7

Minor BPS

35.5

-1

2.1

44.89

46.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005657

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020585

7499651 - 7504546

4896

ENSAPLT00000018699

7499651 - 7504546

4896

ENSAPLT00000005868

7500162 - 7504546

4385