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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_7503932_7504085_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7503932 - 7504085
Intron Length:
154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGCGCC
5'SS Class:
major
3'SS Sequence:
CCTCTCCTGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAG
U12 Branch Point Sequence:
CTGTGGGCATCT
Flanking Amino Acid:
SGPVGHPHPSAPCASPTTRQ
Intron Amino Acid Position:
607

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
65.5
42
Major BPS
53.2
0.08
1.7
65.3
43.7
Major PPT
72.7
0.51
0.9
68.7
31.7
Minor 5ss
38.1
-1.3
3.3
52.1
44.7
Minor BPS
30.8
-1.3
2.7
51.02
49.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005657
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020585
7499651 - 7504546
4896
ENSAPLT00000018699
7499651 - 7504546
4896
ENSAPLT00000005868
7500162 - 7504546
4385