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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_751136_752855_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
751136 - 752855
Intron Length:
1720

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGACTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTATTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
GTGTTCTTATTT
Flanking Amino Acid:
TEAALSDCSKAVELDPNYIR
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
71.6
38.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
88.2
0.86
0.7
80.5
36.7
Minor 5ss
42.6
-0.8
3.1
59.4
45.3
Minor BPS
63.1
0.49
1.6
75.91
41.4

Associated Gene:

Gene:
TTC1
Ensembl Gene ID:
ENSAPLG00000008791
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009153
732665 - 767466
34802