Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_7516289_7521134_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

7516289 - 7521134

Intron Length:

4846

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATC|GTGAGCGGG

5'SS Class:

weak_major

3'SS Sequence:

TTCTGTCTTGAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTGAAT

U12 Branch Point Sequence:

TCTGTCTTGAAG

Flanking Amino Acid:

LHYGLYKKMIVFKPYQASQH

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

57.6

0.18

1.3

46.7

43.6

Major BPS

74.6

0.61

1.4

34.5

Major PPT

74.4

0.55

75.2

33.6

Minor 5ss

31.8

-2.1

3.3

41.7

Minor BPS

53.2

-0

1.7

58.63

43.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005060

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044775

7516055 - 7529855

13801

ENSAPLT00000005278

7516055 - 7529431

13377