Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_7523005_7523506_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7523005 - 7523506

Intron Length:

502

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACTGAG

5'SS Class:

strong_major

3'SS Sequence:

TTTCCTTCCTTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATCTCAA

U12 Branch Point Sequence:

AGTAACTTATTT

Flanking Amino Acid:

LQGATQLNNKICDIAINWAG

Intron Amino Acid Position:

122

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.74

1.1

72.3

39.5

Major BPS

76.9

0.67

0.8

77.7

26.1

Major PPT

81.6

0.71

0.6

81.3

23.7

Minor 5ss

37.6

-1.4

3.2

48.7

47.5

Minor BPS

50.6

0.1

1.8

69.3

41.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005060

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044775

7516055 - 7529855

13801

ENSAPLT00000005278

7516055 - 7529431

13377