About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_7528648_7528927_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7528648 - 7528927
Intron Length:
280

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCAACT
5'SS Class:
major
3'SS Sequence:
TCTCTTCCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TCTTCACTAATG
Flanking Amino Acid:
EERGSEENYSRPEAANEFYD
Intron Amino Acid Position:
406

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.51
1.2
70.8
39.3
Major BPS
76.8
0.67
1
66
40.9
Major PPT
76.5
0.6
0.7
69.8
31.1
Minor 5ss
47.7
-0.2
2.6
67.9
42.7
Minor BPS
53.8
-0
2
65.26
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005060
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005278
7516055 - 7529431
13377