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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_753005_759033_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
753005 - 759033
Intron Length:
6029

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCCTT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCTCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TTCCTCTCCACA
Flanking Amino Acid:
SVHQAREACMRLPRQIEERN
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
74.5
41.9
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
81
0.7
0.7
75.9
26.3
Minor 5ss
43.9
-0.7
3.2
62.5
43.1
Minor BPS
48.6
-0.1
2
64.43
42.1

Associated Gene:

Gene:
TTC1
Ensembl Gene ID:
ENSAPLG00000008791
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009153
732665 - 767466
34802