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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_7563527_7563607_F

Intron Information:

Intron Rank:
129941
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
7563527 - 7563607
Intron Length:
81

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
CTCTCGGGGCAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
GGGTAATTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
77
33.6
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
47.8
-0.1
1.2
43.6
41.5
Minor 5ss
36.3
-1.6
2.7
38.8
40.3
Minor BPS
44.5
-0.3
2
59.8
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019917
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039795
7563337 - 7565461
2125