Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_7582568_7587072_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

7582568 - 7587072

Intron Length:

4505

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTTTGCTGT

5'SS Class:

weak_major

3'SS Sequence:

TCCCCGGTGTCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCCCAC

U12 Branch Point Sequence:

CCCTGCCCACTG

Flanking Amino Acid:

LVSISLVSCVIPCAGRSPPA

Intron Amino Acid Position:

707

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

57.3

0.17

1.3

56.5

Major BPS

48.9

-0

1.3

58.1

40.4

Major PPT

62.3

0.28

1.1

60.3

40.4

Minor 5ss

51.7

0.06

2.5

70.1

40.5

Minor BPS

33.1

-1.4

2.1

31.02

41.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020510

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041822

7582438 - 7589192

6755