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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_7584761_7598501_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7584761 - 7598501
Intron Length:
13741

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGTAG
5'SS Class:
major
3'SS Sequence:
ATTTTCTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TCTTTTCTATTT
Flanking Amino Acid:
TTSRLPTPTEQAQPNTDWRF
Intron Amino Acid Position:
812

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
68.5
38.9
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
87.2
0.84
0.7
82
29.2
Minor 5ss
36.1
-1.6
3.2
46.5
48.8
Minor BPS
49.4
0.03
1.9
71.32
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004903
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005067
7569607 - 7600934
31328