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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_7584761_7603923_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7584761 - 7603923
Intron Length:
19163

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTGC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TCTTTTCTATTT
Flanking Amino Acid:
DPPSPESTAEQAQPNTDWRF
Intron Amino Acid Position:
815

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
69.2
38.5
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
87.2
0.84
0.7
82
29.2
Minor 5ss
38.8
-1.3
3
50.2
46.4
Minor BPS
49.4
0.03
1.9
71.32
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004903
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030402
7569607 - 7606365
36759